Files
file	acyclcfg.h

file	acyclicConfigs.h

file	acyclicConfigs.hpp

file	BmpCubCelSetBuilder.hpp

file	BmpCubSetBuilder.hpp

file	cubSetFunctors.hpp

file	readCubCellSet.hpp

file	readCubFile.h

file	readCubFile.hpp

file	toCub.hpp

file	VectSetBuilder.hpp

file	ChainAux.h

file	ChainAux.hpp

file	ChainT.h

file	FGAGrpSignature.h

file	FreeChainComplex.h

file	FreeChainComplex.hpp

file	FreeModule.h

file	FreeModuleHomomorphism.h

file	homAlgFunctors.hpp

file	homologicalAlgebra.h

file	homologicalAlgebra.hpp

file	HomologySignature.h

file	IdChainMap.hpp

file	ProjChainMap.hpp

file	QuotientGradedModule.h

file	QuotientModule.h

file	SubModule.h

file	ChainMapCrHom.hpp

file	CrbInclHomology.hpp

file	CrbMapHomMD.h

file	InclusionHomology.hpp

file	MVCelMapCrHom.hpp

file	MVFullMapPreprocess.hpp

file	ArHomMD.hpp

file	ArHomology.hpp

file	AsHomology.hpp

file	AsLtHomology.hpp

file	CrbHomology.hpp

file	CrHomology.hpp

file	bmd2cub.cpp

file	cub2bmd.cpp

file	cub2cubcel.cpp

file	CrbIncHom.cpp

file	CrbMapHom.cpp

file	CrbProjHom.cpp

file	ArHom.cpp

file	ArHom.cpp

file	AsHom.cpp

file	AsLtHom.cpp

file	bbm.cpp

file	CrbHom.cpp

file	cubRedHom.cpp

file	ReducibleFreeChainComplexZ.cpp

Namespaces
	experimental

Classes
class	BmpCubCelSetBuilder< P_Set >

class	BmpCubCelMVMapBuilder< P_Set, P_DomSet, P_RngSet >

class	BmpCubSetBuilder< P_Set >

class	BmpCubMVMapBuilder< P_Set, P_DomSet, P_RngSet >

class	CubSetBuilder

class	CubSetFunctors< P_CubSet, P_CubCelSet, P_FreeChainComplex >

class	VectSetBuilder

struct	VectMapBuilder

class	VectBuilder< P_ElementarySet >

class	ChainAux< freeModuleType >

class	ChainT< Chain_Container >

class	FGAGrpSignature< P_Scalar, P_Int >

class	FreeChainComplex< freeModuleType >

class	FreeModule< generatorType, matrixType, intType >

class	FreeModuleHomomorphism< generatorType, matrixType, intType >

class	HomAlgFunctors< P_FreeModule, P_ReducibleFreeChainComplexType >

class	HomologySignature< ScalarType, IntType >

class	IdChainMap< P_Gen, P_Scalar >

class	ProjChainMap< P_DomChain, P_RngChain >

class	QuotientGradedModule< freeModuleType >

class	QuotientModule< freeModuleType >

class	SubModule< freeModuleType >

class	ChainMapCrHom< P_DomSet, P_RngSet, P_Scalar, P_ChainMap >

struct	CrbMapHom< embDim >

struct	CrbMapHom< 0 >

struct	InclusionHomology< SCubCelSet, FreeChainComplexType >

class	MVCelMapCrHom< P_Graph, P_Dom, P_Rng, P_Scalar >

class	MVFullMapPreprocess< P_Graph, P_Dom, P_Rng, domEmbDim, rngEmbDim >

class	ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >

class	ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::ReduciblePair

class	ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::ReducedPair

Macros
#define	ACYCLIC_CONFIGS_D3MARKER "ChomP_acyclicConfigsD3"

#define	FOR(i, a, b) for (int i = (a); i <= (b); ++i)

#define	FORD(i, a, b) for (int i = (a); i >= (b); --i)

#define	FOREACH(it, coll) for (typeof((coll).begin()) it = (coll).begin(); it != (coll).end(); ++it)

Typedefs
typedef P_Set	BmpCubCelSetBuilder< P_Set >::SetType

typedef P_Set	BmpCubSetBuilder< P_Set >::SetType

typedef FreeChainComplex< FreeModule< ElementaryCell, capd::vectalg::Matrix< int, 0, 0 >, int > >	BasicElementaryCellFreeChainComplexType

typedef std::vector< int >	VectSetBuilder::intVect

typedef std::vector< intVect >	VectSetBuilder::SetDataType

typedef std::vector< std::pair< bool, intVect > >	VectMapBuilder::MapDataType

typedef std::vector< int >	VectMapBuilder::intVect

typedef ElementaryCube	ElementarySetType

typedef VectBuilder< ElementarySetType >	RepSetType

typedef FreeModule< int, capd::vectalg::Matrix< int, 0, 0 > >	ZFreeModule

typedef ReducibleFreeChainComplex< ZFreeModule, int >	ZRFCComplex

typedef ElementaryCube	ElementarySetType

typedef VectBuilder< ElementarySetType >	RepSetType

typedef FreeModule< int, capd::vectalg::Matrix< int, 0, 0 > >	ZFreeModule

typedef ReducibleFreeChainComplex< ZFreeModule, int >	ZRFCComplex

typedef ECellMDCodeT< cluster, embeddingDim >	CubFaceIndexType

typedef ECellMDCodeT< cluster, embeddingDim >	ElementaryCellType

typedef CubCellSetT< EuclBitSet, ReductionPairT< CubFaceIndexType > >	SCubCelSet

typedef capd::vectalg::Matrix< int, 0, 0 >	MatrixType

typedef MatrixType::ColumnVectorType	ColumnVectorType

typedef MatrixType::ScalarType	ScalarType

typedef FreeModule< ElementaryCellType, MatrixType >	FreeModuleType

typedef FreeChainComplex< FreeModule< ElementaryCellType, MatrixType > >	FreeChainComplexType

typedef ChainT< ChainContainer< ElementaryCellType, int > >	ChainType

typedef ElementaryCell	ElementaryCellType

typedef int	ScalarType

typedef capd::vectalg::Matrix< ScalarType, 0, 0 >	MatrixType

typedef FreeModule< ElementaryCellType, MatrixType >	FreeModuleType

typedef FreeChainComplex< FreeModule< ElementaryCellType, MatrixType > >	FreeChainComplexType

typedef CubSetFunctors< BCubSet, BCubCelSet, FreeChainComplexType >	CubSetFunctorsType

typedef unsigned long int	word

typedef unsigned long int	word

typedef unsigned long int	word

typedef int	ScalarType

typedef unsigned long long	longcluster

typedef ECellMDCodeT< longcluster, graphEmbDim >	GraphGenType

typedef ECellMDCodeT< cluster, domEmbDim >	DomGenType

typedef ECellMDCodeT< cluster, rngEmbDim >	RngGenType

typedef BitSetT< BitmapT< cluster > >	BitSet

typedef EuclBitSetT< BitSet, domEmbDim >	DomEuclBitSet

typedef EuclBitSetT< BitSet, rngEmbDim >	RngEuclBitSet

typedef EuclBitSetT< BitSet, graphEmbDim >	GraphEuclBitSet

typedef CubCellSetT< DomEuclBitSet, ReductionPairT< DomGenType > >	DomCubCelSet

typedef CubCellSetT< RngEuclBitSet, ReductionPairT< RngGenType > >	RngCubCelSet

typedef CubCellSetT< GraphEuclBitSet, ReductionPairT< GraphGenType > >	GraphCubCelSet

typedef BmpCubCelMVMapBuilder< GraphCubCelSet, DomCubCelSet, RngCubCelSet >	BmpCubCelMVMapBuilderType

typedef MVCelMapCrHom< GraphCubCelSet, DomCubCelSet, RngCubCelSet, ScalarType >	MVMapCrHomType

typedef int	ScalarType

typedef unsigned long int	cluster

typedef ECellMDCodeT< cluster, domEmbDim >	DomGenType

typedef ECellMDCodeT< cluster, rngEmbDim >	RngGenType

typedef BitSetT< BitmapT< cluster > >	BitSet

typedef EuclBitSetT< BitSet, domEmbDim >	DomEuclBitSet

typedef EuclBitSetT< BitSet, rngEmbDim >	RngEuclBitSet

typedef CubSetT< DomEuclBitSet >	DomBCubSet

typedef CubSetT< RngEuclBitSet >	RngBCubSet

typedef CubCellSetT< DomEuclBitSet, ReductionPairT< DomGenType > >	DomSCubCelSet

typedef CubCellSetT< RngEuclBitSet, ReductionPairT< RngGenType > >	RngSCubCelSet

typedef capd::vectalg::Matrix< ScalarType, 0, 0 >	MatrixType

typedef FreeModule< DomGenType, MatrixType >	DomFreeModuleType

typedef FreeChainComplex< DomFreeModuleType >	DomFreeChainComplexType

typedef FreeModule< RngGenType, MatrixType >	RngFreeModuleType

typedef FreeChainComplex< RngFreeModuleType >	RngFreeChainComplexType

typedef ChainT< ChainContainer< DomGenType, ScalarType > >	DomChainType

typedef ChainT< ChainContainer< RngGenType, ScalarType > >	RngChainType

typedef ProjChainMap< DomChainType, RngChainType >	ProjChainMapType

typedef int	GeneratorCode

typedef FreeModule< GeneratorCode, capd::vectalg::Matrix< int, 0, 0 >, int >	ZFreeModule

Functions
void	readAcyclicConfigs ()
	Creates the table of 3D acyclic configurations if necessary. The support for bzipped configurations added by Pawel Pilarczyk. More...

void	readAcyclicConfigs_previous ()

	BmpCubCelSetBuilder< P_Set >::BmpCubCelSetBuilder (CRef< SetType > A_setCR)

void	BmpCubCelSetBuilder< P_Set >::setDim (int A_embDim)

void	BmpCubCelSetBuilder< P_Set >::setBoundingBox (int A_cmin[], int A_cmax[])

void	BmpCubCelSetBuilder< P_Set >::addCell (int coords[])

void	BmpCubCelSetBuilder< P_Set >::finalize ()

void	BmpCubCelSetBuilder< P_Set >::readBmp (std::ifstream &in)

void	BmpCubCelSetBuilder< P_Set >::show ()

int	BmpCubCelSetBuilder< P_Set >::size ()

	BmpCubCelMVMapBuilder< P_Set, P_DomSet, P_RngSet >::BmpCubCelMVMapBuilder (CRef< SetType > A_setCR, CRef< DomSetType > A_domSetCR, CRef< RngSetType > A_rngSetCR)

void	BmpCubCelMVMapBuilder< P_Set, P_DomSet, P_RngSet >::setDomDim (int A_domEmbDim)

void	BmpCubCelMVMapBuilder< P_Set, P_DomSet, P_RngSet >::setRngDim (int A_rngEmbDim)

void	BmpCubCelMVMapBuilder< P_Set, P_DomSet, P_RngSet >::setBoundingBox (int A_cmin[], int A_cmax[])

void	BmpCubCelMVMapBuilder< P_Set, P_DomSet, P_RngSet >::addDomCell (int coords[])

void	BmpCubCelMVMapBuilder< P_Set, P_DomSet, P_RngSet >::addRngCell (int coords[])

void	BmpCubCelMVMapBuilder< P_Set, P_DomSet, P_RngSet >::finalize ()

void	BmpCubCelMVMapBuilder< P_Set, P_DomSet, P_RngSet >::show ()

	BmpCubSetBuilder< P_Set >::BmpCubSetBuilder (CRef< SetType > A_setCR)

bool	BmpCubSetBuilder< P_Set >::isBoundingBoxNeeded ()

void	BmpCubSetBuilder< P_Set >::setFullCubes (bool b)

void	BmpCubSetBuilder< P_Set >::setDim (int A_embDim)

void	BmpCubSetBuilder< P_Set >::setBoundingBox (int A_cmin[], int A_cmax[])

void	BmpCubSetBuilder< P_Set >::addCell (int coords[])

void	BmpCubSetBuilder< P_Set >::readBmp (std::ifstream &in)

void	BmpCubSetBuilder< P_Set >::finalize ()

void	BmpCubSetBuilder< P_Set >::show ()

int	BmpCubSetBuilder< P_Set >::size ()

	BmpCubMVMapBuilder< P_Set, P_DomSet, P_RngSet >::BmpCubMVMapBuilder (CRef< SetType > A_setCR, CRef< DomSetType > A_domSetCR, CRef< RngSetType > A_rngSetCR)

void	BmpCubMVMapBuilder< P_Set, P_DomSet, P_RngSet >::setDomDim (int A_domEmbDim)

void	BmpCubMVMapBuilder< P_Set, P_DomSet, P_RngSet >::setRngDim (int A_rngEmbDim)

void	BmpCubMVMapBuilder< P_Set, P_DomSet, P_RngSet >::setBoundingBox (int A_cmin[], int A_cmax[])

void	BmpCubMVMapBuilder< P_Set, P_DomSet, P_RngSet >::addDomCell (int coords[])

void	BmpCubMVMapBuilder< P_Set, P_DomSet, P_RngSet >::addRngCell (int coords[])

void	BmpCubMVMapBuilder< P_Set, P_DomSet, P_RngSet >::show ()

	CubSetBuilder::CubSetBuilder ()

bool	CubSetBuilder::isBoundingBoxNeeded ()

void	CubSetBuilder::setBoundingBoxNeeded (bool _boundingBoxNeeded)

void	CubSetBuilder::setFullCubes (bool b)

void	CubSetBuilder::setOpenCells (bool b)

bool	CubSetBuilder::onlyFullCubes ()

void	CubSetBuilder::setDim (int A_embDim)

void	CubSetBuilder::setFileType (FileType A_fileType)

int	CubSetBuilder::getDim ()

FileType	CubSetBuilder::getFileType ()

virtual void	CubSetBuilder::readBmp (std::ifstream &in)

virtual void	CubSetBuilder::setBoundingBox (int A_cmin[], int A_cmax[])

virtual void	CubSetBuilder::addCell (int coords[])

virtual void	CubSetBuilder::finalize ()

template<typename P_CubSet , typename P_CubCellSet >
CRef< P_CubCellSet >	readCubCellSet (const char *fileName)

CRef< BCubSet >	readCubFile (const char fileName, const int &dims, const char *&bitmap)

template<typename P_CubSet , typename P_CubCellSet >
CRef< P_CubSet >	readCubFile (const char *fileName)

template<int dim>
void	convert (const char inFileName, const char outFileName, FileType fileType, bool fullCubes)

void	toCub (const char inFileName, const char outFileName)

	VectSetBuilder::VectSetBuilder ()

	VectSetBuilder::VectSetBuilder (CRef< SetDataType > A_setDataCR)

bool	VectSetBuilder::isBoundingBoxNeeded ()

void	VectSetBuilder::setFullCubes (bool b)

void	VectSetBuilder::setDim (int A_embDim)

void	VectSetBuilder::setBoundingBox (int A_cmin[], int A_cmax[])

void	VectSetBuilder::addCell (int coords[])

void	VectSetBuilder::show ()

int	VectSetBuilder::size ()

	VectMapBuilder::VectMapBuilder ()

void	VectMapBuilder::setDomDim (int A_domEmbDim)

void	VectMapBuilder::setRngDim (int A_rngEmbDim)

void	VectMapBuilder::addDomCell (int coords[])

void	VectMapBuilder::addRngCell (int coords[])

void	VectMapBuilder::addCell (int coords[])

void	VectMapBuilder::finalize ()

void	VectMapBuilder::show ()

void	bbmMD (const char *fileName)

template<typename freeModuleType >
void	matrixColumnsToChains (const freeModuleType &A_BaseModule, const typename freeModuleType::MatrixType &A_matrix, std::vector< ChainAux< freeModuleType > > &A_chains)

template<class Chain_Container >
std::ostream &	operator<< (std::ostream &out, const ChainT< Chain_Container > &A_chain)

template<typename Chain_Container >
ChainT< Chain_Container >::ScalarType	operator* (const ChainT< Chain_Container > &A_chain1, const ChainT< Chain_Container > &A_chain2)

template<class Chain_Container >
ChainT< Chain_Container >	operator* (typename ChainT< Chain_Container >::ScalarType A_s, const ChainT< Chain_Container > &A_chain)

std::string	fieldStringForm (int)

template<typename freeModuleType >
std::ostream &	operator<< (std::ostream &out, const FreeChainComplex< freeModuleType > &)

template<typename freeModuleType >
void	swap (FreeChainComplex< freeModuleType > &A_fcc1, FreeChainComplex< freeModuleType > &)

template<typename freeModuleType2 >
void	swap (QuotientGradedModule< freeModuleType2 > &A_qgm1, QuotientGradedModule< freeModuleType2 > &A_qgm2)

template<typename freeModuleType >
void	swap (QuotientModule< freeModuleType > &A_subm1, QuotientModule< freeModuleType > &A_subm2)

template<typename freeModuleType2 >
void	swap (QuotientModule< freeModuleType2 > &A_subm1, QuotientModule< freeModuleType2 > &A_subm2)

std::string	CrbIncHom (const char subFileName, const char supFileName)

void	ArHomMD (const char *fileName)

void	ArHom (int embDim, const int dims[], const char bytes, int betti, int streaming)

void	ArHom (const char *fileName)

void	AsHom (int embDim, const int dims[], const char bytes, int betti, int streaming)

void	AsHom (const char *fileName)

void	AsLtHom (int embDim, const int dims[], const char bytes, int betti, int streaming)

void	AsLtHom (const char *fileName)

void	CrbHom (const char *fileName)

void	CrHom (int embDim, const int dims[], const char bytes, int betti, int streaming)

void	CrHom (const char *fileName)

template<typename freeModuleType , typename P_GeneratorCode >
void	swap (ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode > &A_rfcc1, ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode > &A_rfcc2)

template<typename freeModuleType , typename P_GeneratorCode >
std::ostream &	operator<< (std::ostream &out, const ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode > &A_rfc)

template<typename freeModuleType2 , typename GeneratorCode2 >
void	swap (ReducibleFreeChainComplex< freeModuleType2, GeneratorCode2 > &A_rfcc1, ReducibleFreeChainComplex< freeModuleType2, GeneratorCode2 > &A_rfcc2)

int	main (int argc, char **argv)

void	handle_unexpected ()

void	handle_terminate ()

int	main (int argc, char *argv[])

RngGenType	projMap (DomGenType domGen)

std::string	CrbProjHom (const char domFileName, const char rngFileName)

template<int dim>
void	getHomology (const char *fileName, FileType fileType, bool fullCubes, const std::string &A_engine, OptionMapType &options)

void	RedHom (const char *fileName, const std::string &engine, OptionMapType &options)

template std::ostream &	operator<< < ZFreeModule > (std::ostream &out, const ReducibleFreeChainComplex< ZFreeModule > &)

template<typename GeneratorType2 >
	FreeChainComplex< freeModuleType >::FreeChainComplex (const std::vector< GeneratorType2 > &A_gens)

template<typename GeneratorType2 >
	FreeChainComplex< freeModuleType >::FreeChainComplex (const std::set< GeneratorType2 > &A_gensSet)

template<typename Iterator , typename GeneratorData >
	FreeChainComplex< freeModuleType >::FreeChainComplex (Iterator begin, Iterator end, GeneratorData generatorData)

static CRef< QuotientGradedModule< FreeModuleType > >	HomAlgFunctors< P_FreeModule, P_ReducibleFreeChainComplexType >::HomologyViaSmith (CRef< FreeChainComplex< FreeModuleType > > A_fccCR)

static CRef< HomologySignatureType >	HomAlgFunctors< P_FreeModule, P_ReducibleFreeChainComplexType >::homSignViaAR_Random (CRef< ReducibleFreeChainComplexType > A_rfccCR)

static CRef< HomologySignatureType >	HomAlgFunctors< P_FreeModule, P_ReducibleFreeChainComplexType >::homSignViaAR_Sorted (CRef< ReducibleFreeChainComplexType > A_rfccCR)

static CRef< HomologySignatureType >	HomAlgFunctors< P_FreeModule, P_ReducibleFreeChainComplexType >::homSignViaAR_LocallySorted (CRef< ReducibleFreeChainComplexType > A_rfccCR)

int	ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::topDim ()

void	ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::storeReducedPair (int A_coFaceDim, GeneratorCode A_coFace, GeneratorCode A_face, const Chain &A_bdy, const CoChain &A_cbdy, ScalarType A_lambda)

void	ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::reduce (Chain &A_chain)

void	ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::restore (Chain &A_chain)

template<typename freeModuleType2 >
	ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::ReducibleFreeChainComplex (const FreeChainComplex< freeModuleType2 > &fcc)

template<typename GeneratorType2 >
	ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::ReducibleFreeChainComplex (const std::vector< GeneratorType2 > &A_gens)

template<typename GeneratorType2 >
	ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::ReducibleFreeChainComplex (const std::set< GeneratorType2 > &A_gensSet)

template<typename P_Set >
	ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::ReducibleFreeChainComplex (const P_Set &A_set, bool A_storeReducedPairs=false)

template<typename Iterator , typename GeneratorData >
	ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::ReducibleFreeChainComplex (Iterator begin, Iterator end, GeneratorData generatorData, bool A_storeReducedPairs=false)

	ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::operator FreeChainComplex< freeModuleType > ()

void	ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::reducePair (int q, typename GeneratorBoundaries::iterator coFacePos, typename Chain::iterator facePos)

int	ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::reduce ()

int	ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::findMeasure (const int &coFaceDim, const GeneratorCode &coFace, const GeneratorCode &face)

void	ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::extractReduciblePairsInVicinityOf (int dim, GeneratorCode g, std::set< ReduciblePair > &source, std::list< ReduciblePair > &destination)

int	ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::reduceViaSort ()

int	ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::reduceViaLocalSort ()

bool	ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::reduceViaStack (unsigned int searchedCoboundrySize, int &pairsReduced)

void	ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::reduceFromBottom ()

bool	ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::removeSimpleHomologyGenerators (std::vector< std::vector< GeneratorCode > > &simpleHomologyGenerators)

template<typename Iterator , typename GeneratorData >
void	ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::init (Iterator begin, Iterator end, GeneratorData generatorData)

Variables
unsigned char *	acyclicConfigsD3
	Uncompressed table (8 MB) of 3D acyclic neighborhood configurations. More...

unsigned char	bzip2acyclicConfigsD3 []
	The acyclic configurations table compressed with bzip2. More...

unsigned int	bzip2acyclicConfigsD3size

static const int	BmpCubCelSetBuilder< P_Set >::embDim =SetType::theDim

CRef< SetType >	BmpCubCelSetBuilder< P_Set >::setCR

std::vector< int >	BmpCubCelSetBuilder< P_Set >::cmin

std::vector< int >	BmpCubCelSetBuilder< P_Set >::cmax

std::vector< int >	BmpCubCelSetBuilder< P_Set >::boundingBox

static const int	BmpCubCelMVMapBuilder< P_Set, P_DomSet, P_RngSet >::embDim =SetType::theDim

static const int	BmpCubCelMVMapBuilder< P_Set, P_DomSet, P_RngSet >::domEmbDim =DomSetType::theDim

static const int	BmpCubCelMVMapBuilder< P_Set, P_DomSet, P_RngSet >::rngEmbDim =RngSetType::theDim

static const int	BmpCubSetBuilder< P_Set >::embDim =SetType::theDim

CRef< SetType >	BmpCubSetBuilder< P_Set >::setCR

std::vector< int >	BmpCubSetBuilder< P_Set >::cmin

std::vector< int >	BmpCubSetBuilder< P_Set >::cmax

std::vector< int >	BmpCubSetBuilder< P_Set >::boundingBox

static const int	BmpCubMVMapBuilder< P_Set, P_DomSet, P_RngSet >::embDim =SetType::theDim

static const int	BmpCubMVMapBuilder< P_Set, P_DomSet, P_RngSet >::domEmbDim =DomSetType::theDim

static const int	BmpCubMVMapBuilder< P_Set, P_DomSet, P_RngSet >::rngEmbDim =RngSetType::theDim

bool	CubSetBuilder::fullCubes

bool	CubSetBuilder::openCells

bool	CubSetBuilder::boundingBoxNeeded

int	CubSetBuilder::embDim

FileType	CubSetBuilder::fileType

template<typename P_CubSet , typename P_CubCelSet , typename P_FreeChainComplex >
CubSetFunctors< P_CubSet, P_CubCelSet, P_FreeChainComplex >::CubCelSet_CubSet_FunctorType CubSetFunctors< P_CubSet, P_CubCelSet, P_FreeChainComplex >::CubCelSet_From_CubSet &	CubSetFunctors

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CRef< SetDataType >	VectSetBuilder::setDataCR

int	VectSetBuilder::embDim

int	VectMapBuilder::domEmbDim

int	VectMapBuilder::rngEmbDim

intVect	VectMapBuilder::locDomData

intVect	VectMapBuilder::locRngData

MapDataType	VectMapBuilder::mapData

intVect	VectMapBuilder::cDomMin

intVect	VectMapBuilder::cDomMax

intVect	VectMapBuilder::cRngMin

intVect	VectMapBuilder::cRngMax

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const int	eDim =2

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const int	domEmbDim =3

const int	rngEmbDim =3

const int	graphEmbDim =domEmbDim+rngEmbDim

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const int	domEmbDim =3

const int	rngEmbDim =2

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static int	CubSetFunctors< P_CubSet, P_CubCelSet, P_FreeChainComplex >::lastAcyclicSubsetSize =0

static CrbMapHom	CrbMapHom< embDim >::selector

Detailed Description

Macro Definition Documentation

#define ACYCLIC_CONFIGS_D3MARKER "ChomP_acyclicConfigsD3"

#define FOR	(	i,
		a,
		b
	)	for (int i = (a); i <= (b); ++i)

#define FORD	(	i,
		a,
		b
	)	for (int i = (a); i >= (b); --i)

#define FOREACH	(	it,
		coll
	)	for (typeof((coll).begin()) it = (coll).begin(); it != (coll).end(); ++it)

Typedef Documentation

typedef FreeChainComplex<FreeModule<ElementaryCell,capd::vectalg::Matrix<int,0,0>, int > > BasicElementaryCellFreeChainComplexType

typedef BitSetT<BitmapT<cluster> > BitSet

typedef BmpCubCelMVMapBuilder<GraphCubCelSet,DomCubCelSet,RngCubCelSet> BmpCubCelMVMapBuilderType

typedef ChainT<ChainContainer<ElementaryCellType,int> > ChainType

typedef unsigned long int cluster

typedef MatrixType::ColumnVectorType ColumnVectorType

typedef ECellMDCodeT<cluster,embeddingDim> CubFaceIndexType

typedef CubSetFunctors<BCubSet,BCubCelSet,FreeChainComplexType> CubSetFunctorsType

typedef CubSetT<DomEuclBitSet> DomBCubSet

typedef ChainT<ChainContainer<DomGenType,ScalarType> > DomChainType

typedef CubCellSetT<DomEuclBitSet,ReductionPairT<DomGenType> > DomCubCelSet

typedef EuclBitSetT<BitSet,domEmbDim> DomEuclBitSet

typedef FreeChainComplex<DomFreeModuleType> DomFreeChainComplexType

typedef FreeModule<DomGenType,MatrixType> DomFreeModuleType

typedef ECellMDCodeT<cluster,domEmbDim> DomGenType

typedef CubCellSetT<DomEuclBitSet,ReductionPairT<DomGenType> > DomSCubCelSet

typedef ElementaryCell ElementaryCellType

typedef ECellMDCodeT<cluster,embeddingDim> ElementaryCellType

typedef ElementaryCube ElementarySetType

typedef FreeChainComplex<FreeModule<ElementaryCellType,MatrixType> > FreeChainComplexType

typedef FreeModule<ElementaryCellType,MatrixType> FreeModuleType

typedef int GeneratorCode

typedef CubCellSetT<GraphEuclBitSet,ReductionPairT<GraphGenType> > GraphCubCelSet

typedef EuclBitSetT<BitSet,graphEmbDim> GraphEuclBitSet

typedef ECellMDCodeT<longcluster,graphEmbDim> GraphGenType

typedef std::vector<int> VectSetBuilder::intVect

typedef std::vector<int> VectMapBuilder::intVect

typedef unsigned long long longcluster

typedef std::vector<std::pair<bool,intVect> > VectMapBuilder::MapDataType

typedef capd::vectalg::Matrix<ScalarType,0,0> MatrixType

typedef capd::vectalg::Matrix<int,0,0> MatrixType

typedef MVCelMapCrHom<GraphCubCelSet,DomCubCelSet,RngCubCelSet,ScalarType> MVMapCrHomType

typedef ProjChainMap<DomChainType,RngChainType> ProjChainMapType

typedef VectBuilder<ElementarySetType> RepSetType

typedef CubSetT<RngEuclBitSet> RngBCubSet

typedef ChainT<ChainContainer<RngGenType,ScalarType> > RngChainType

typedef CubCellSetT<RngEuclBitSet,ReductionPairT<RngGenType> > RngCubCelSet

typedef EuclBitSetT<BitSet,rngEmbDim> RngEuclBitSet

typedef FreeChainComplex<RngFreeModuleType> RngFreeChainComplexType

typedef FreeModule<RngGenType,MatrixType> RngFreeModuleType

typedef ECellMDCodeT<cluster,rngEmbDim> RngGenType

typedef CubCellSetT<RngEuclBitSet,ReductionPairT<RngGenType> > RngSCubCelSet

typedef int ScalarType

typedef MatrixType::ScalarType ScalarType

typedef CubCellSetT<EuclBitSet,ReductionPairT<CubFaceIndexType> > SCubCelSet

typedef std::vector<intVect> VectSetBuilder::SetDataType

template<typename P_Set >

typedef P_Set BmpCubCelSetBuilder< P_Set >::SetType

template<typename P_Set >

typedef P_Set BmpCubSetBuilder< P_Set >::SetType

typedef unsigned long int word

typedef FreeModule<GeneratorCode,capd::vectalg::Matrix<int,0,0>, int> ZFreeModule

typedef FreeModule<int,capd::vectalg::Matrix<int,0,0> > ZFreeModule

typedef ReducibleFreeChainComplex<ZFreeModule,int> ZRFCComplex

Function Documentation

void VectSetBuilder::addCell ( int coords[] )

inlinevirtual

Reimplemented from CubSetBuilder.

Reimplemented in VectMapBuilder.

virtual void CubSetBuilder::addCell ( int coords[] )

inlinevirtual

Reimplemented in VectMapBuilder, BmpCubCelSetBuilder< P_Set >, BmpCubSetBuilder< P_Set >, VectSetBuilder, and RepCubSetBuilder< P_RepSet >.

template<typename P_Set >

void BmpCubSetBuilder< P_Set >::addCell ( int coords[] )

inlinevirtual

Reimplemented from CubSetBuilder.

template<typename P_Set >

void BmpCubCelSetBuilder< P_Set >::addCell ( int coords[] )

inlinevirtual

Reimplemented from CubSetBuilder.

void VectMapBuilder::addCell ( int coords[] )

inlinevirtual

Reimplemented from VectSetBuilder.

void VectMapBuilder::addDomCell ( int coords[] )

inline

template<typename P_Set , typename P_DomSet , typename P_RngSet >

void BmpCubMVMapBuilder< P_Set, P_DomSet, P_RngSet >::addDomCell ( int coords[] )

inline

template<typename P_Set , typename P_DomSet , typename P_RngSet >

void BmpCubCelMVMapBuilder< P_Set, P_DomSet, P_RngSet >::addDomCell ( int coords[] )

inline

void VectMapBuilder::addRngCell ( int coords[] )

inline

template<typename P_Set , typename P_DomSet , typename P_RngSet >

void BmpCubMVMapBuilder< P_Set, P_DomSet, P_RngSet >::addRngCell ( int coords[] )

inline

template<typename P_Set , typename P_DomSet , typename P_RngSet >

void BmpCubCelMVMapBuilder< P_Set, P_DomSet, P_RngSet >::addRngCell ( int coords[] )

inline

void ArHom	(	int	embDim,
		const int	dims[],
		const char *	bytes,
		int *	betti,
		int	streaming
	)

void ArHom ( const char * fileName )

void ArHomMD ( const char * fileName )

void AsHom	(	int	embDim,
		const int	dims[],
		const char *	bytes,
		int *	betti,
		int	streaming
	)

void AsHom ( const char * fileName )

void AsLtHom	(	int	embDim,
		const int	dims[],
		const char *	bytes,
		int *	betti,
		int	streaming
	)

void AsLtHom ( const char * fileName )

void bbmMD ( const char * fileName )

template<typename P_Set , typename P_DomSet , typename P_RngSet >

BmpCubCelMVMapBuilder< P_Set, P_DomSet, P_RngSet >::BmpCubCelMVMapBuilder	(	CRef< SetType >	A_setCR,
		CRef< DomSetType >	A_domSetCR,
		CRef< RngSetType >	A_rngSetCR
	)

inline

template<typename P_Set >

BmpCubCelSetBuilder< P_Set >::BmpCubCelSetBuilder ( CRef< SetType > A_setCR )

inline

template<typename P_Set , typename P_DomSet , typename P_RngSet >

BmpCubMVMapBuilder< P_Set, P_DomSet, P_RngSet >::BmpCubMVMapBuilder	(	CRef< SetType >	A_setCR,
		CRef< DomSetType >	A_domSetCR,
		CRef< RngSetType >	A_rngSetCR
	)

inline

template<typename P_Set >

BmpCubSetBuilder< P_Set >::BmpCubSetBuilder ( CRef< SetType > A_setCR )

inline

template<int dim>

void convert	(	const char *	inFileName,
		const char *	outFileName,
		FileType	fileType,
		bool	fullCubes
	)

void CrbHom ( const char * fileName )

std::string CrbIncHom	(	const char *	subFileName,
		const char *	supFileName
	)

std::string CrbProjHom	(	const char *	domFileName,
		const char *	rngFileName
	)

void CrHom	(	int	embDim,
		const int	dims[],
		const char *	bytes,
		int *	betti,
		int	streaming
	)

void CrHom ( const char * fileName )

CubSetBuilder::CubSetBuilder ( )

inline

template<typename freeModuleType , typename P_GeneratorCode >

void ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::extractReduciblePairsInVicinityOf	(	int	dim,
		GeneratorCode	g,
		std::set< ReduciblePair > &	source,
		std::list< ReduciblePair > &	destination
	)

std::string fieldStringForm ( int )

inline

virtual void CubSetBuilder::finalize ( )

inlinevirtual

Reimplemented in BmpCubCelMVMapBuilder< P_Set, P_DomSet, P_RngSet >, VectMapBuilder, BmpCubCelSetBuilder< P_Set >, and BmpCubSetBuilder< P_Set >.

template<typename P_Set >

void BmpCubSetBuilder< P_Set >::finalize ( )

inlinevirtual

Reimplemented from CubSetBuilder.

template<typename P_Set >

void BmpCubCelSetBuilder< P_Set >::finalize ( )

inlinevirtual

Reimplemented from CubSetBuilder.

Reimplemented in BmpCubCelMVMapBuilder< P_Set, P_DomSet, P_RngSet >.

void VectMapBuilder::finalize ( )

inlinevirtual

Reimplemented from CubSetBuilder.

template<typename P_Set , typename P_DomSet , typename P_RngSet >

void BmpCubCelMVMapBuilder< P_Set, P_DomSet, P_RngSet >::finalize ( )

inlinevirtual

Reimplemented from BmpCubCelSetBuilder< P_Set >.

template<typename freeModuleType , typename P_GeneratorCode >

int ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::findMeasure	(	const int &	coFaceDim,
		const GeneratorCode &	coFace,
		const GeneratorCode &	face
	)

template<typename freeModuleType >

template<typename GeneratorType2 >

FreeChainComplex< freeModuleType >::FreeChainComplex ( const std::vector< GeneratorType2 > & A_gens )

template<typename freeModuleType >

template<typename GeneratorType2 >

FreeChainComplex< freeModuleType >::FreeChainComplex ( const std::set< GeneratorType2 > & A_gensSet )

template<typename freeModuleType >

template<typename Iterator , typename GeneratorData >

FreeChainComplex< freeModuleType >::FreeChainComplex	(	Iterator	begin,
		Iterator	end,
		GeneratorData	generatorData
	)

int CubSetBuilder::getDim ( )

inline

FileType CubSetBuilder::getFileType ( )

inline

template<int dim>

void getHomology	(	const char *	fileName,
		FileType	fileType,
		bool	fullCubes,
		const std::string &	A_engine,
		OptionMapType &	options
	)

void handle_terminate ( )

void handle_unexpected ( )

template<typename P_FreeModule , typename P_ReducibleFreeChainComplexType = ReducibleFreeChainComplex<P_FreeModule>>

HomAlgFunctors< FreeModuleType, ReducibleFreeChainComplexType >::Homology_FCComplex HomAlgFunctors< FreeModuleType, ReducibleFreeChainComplexType >::homology_Smith_FCComplex & HomAlgFunctors< FreeModuleType, ReducibleFreeChainComplexType >::HomologyViaSmith ( CRef< FreeChainComplex< FreeModuleType > > A_fccCR )

inlinestatic

template<typename P_FreeModule , typename P_ReducibleFreeChainComplexType = ReducibleFreeChainComplex<P_FreeModule>>

HomAlgFunctors< FreeModuleType, ReducibleFreeChainComplexType >::HomSign_RFCComplex HomAlgFunctors< FreeModuleType, ReducibleFreeChainComplexType >::homSign_ArLocallySorted_RFCComplex & HomAlgFunctors< FreeModuleType, ReducibleFreeChainComplexType >::homSignViaAR_LocallySorted ( CRef< ReducibleFreeChainComplexType > A_rfccCR )

inlinestatic

template<typename P_FreeModule , typename P_ReducibleFreeChainComplexType = ReducibleFreeChainComplex<P_FreeModule>>

HomAlgFunctors< FreeModuleType, ReducibleFreeChainComplexType >::HomSign_RFCComplex HomAlgFunctors< FreeModuleType, ReducibleFreeChainComplexType >::homSign_ArRandom_RFCComplex & HomAlgFunctors< FreeModuleType, ReducibleFreeChainComplexType >::homSignViaAR_Random ( CRef< ReducibleFreeChainComplexType > A_rfccCR )

inlinestatic

template<typename P_FreeModule , typename P_ReducibleFreeChainComplexType = ReducibleFreeChainComplex<P_FreeModule>>

HomAlgFunctors< FreeModuleType, ReducibleFreeChainComplexType >::HomSign_RFCComplex HomAlgFunctors< FreeModuleType, ReducibleFreeChainComplexType >::homSign_ArSorted_RFCComplex & HomAlgFunctors< FreeModuleType, ReducibleFreeChainComplexType >::homSignViaAR_Sorted ( CRef< ReducibleFreeChainComplexType > A_rfccCR )

inlinestatic

template<typename freeModuleType , typename P_GeneratorCode >

template<typename Iterator , typename GeneratorData >

void ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::init	(	Iterator	begin,
		Iterator	end,
		GeneratorData	generatorData
	)

bool CubSetBuilder::isBoundingBoxNeeded ( )

inline

bool VectSetBuilder::isBoundingBoxNeeded ( )

inline

template<typename P_Set >

bool BmpCubSetBuilder< P_Set >::isBoundingBoxNeeded ( )

inline

int main	(	int	argc,
		char **	argv
	)

int main	(	int	argc,
		char *	argv[]
	)

template<typename freeModuleType >

void matrixColumnsToChains	(	const freeModuleType &	A_BaseModule,
		const typename freeModuleType::MatrixType &	A_matrix,
		std::vector< ChainAux< freeModuleType > > &	A_chains
	)

bool CubSetBuilder::onlyFullCubes ( )

inline

template<typename freeModuleType , typename P_GeneratorCode >

ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::operator FreeChainComplex< freeModuleType > ( )

template<typename Chain_Container >

ChainT<Chain_Container>::ScalarType operator*	(	const ChainT< Chain_Container > &	A_chain1,
		const ChainT< Chain_Container > &	A_chain2
	)

inline

template<class Chain_Container >

ChainT<Chain_Container> operator*	(	typename ChainT< Chain_Container >::ScalarType	A_s,
		const ChainT< Chain_Container > &	A_chain
	)

inline

template<typename freeModuleType >

std::ostream & operator<<	(	std::ostream &	out,
		const FreeChainComplex< freeModuleType > &	A_fCC
	)

template<typename freeModuleType , typename P_GeneratorCode >

std::ostream & operator<<	(	std::ostream &	out,
		const ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode > &	A_rfc
	)

template<class Chain_Container >

std::ostream& operator<<	(	std::ostream &	out,
		const ChainT< Chain_Container > &	A_chain
	)

inline

template std::ostream& operator<< < ZFreeModule >	(	std::ostream &	out,
		const ReducibleFreeChainComplex< ZFreeModule > &
	)

RngGenType projMap ( DomGenType domGen )

void readAcyclicConfigs ( )

Creates the table of 3D acyclic configurations if necessary. The support for bzipped configurations added by Pawel Pilarczyk.

void readAcyclicConfigs_previous ( )

virtual void CubSetBuilder::readBmp ( std::ifstream & in )

inlinevirtual

Reimplemented in BmpCubCelSetBuilder< P_Set >, and BmpCubSetBuilder< P_Set >.

template<typename P_Set >

void BmpCubSetBuilder< P_Set >::readBmp ( std::ifstream & in )

inlinevirtual

Reimplemented from CubSetBuilder.

template<typename P_Set >

void BmpCubCelSetBuilder< P_Set >::readBmp ( std::ifstream & in )

inlinevirtual

Reimplemented from CubSetBuilder.

template<typename P_CubSet , typename P_CubCellSet >

CRef<P_CubCellSet> readCubCellSet ( const char * fileName )

CRef< P_CubSet > readCubFile	(	const char *	fileName,
		const int *&	dims,
		const char *&	bitmap
	)

template<typename P_CubSet , typename P_CubCellSet >

CRef<P_CubSet> readCubFile ( const char * fileName )

void RedHom	(	const char *	fileName,
		const std::string &	engine,
		OptionMapType &	options
	)

template<typename freeModuleType , typename P_GeneratorCode >

template int ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::reduce ( )

template<typename freeModuleType , typename P_GeneratorCode >

void ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::reduce ( Chain & A_chain )

inline

template<typename freeModuleType , typename P_GeneratorCode >

void ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::reduceFromBottom ( )

template<typename freeModuleType , typename P_GeneratorCode >

void ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::reducePair	(	int	q,
		typename GeneratorBoundaries::iterator	coFacePos,
		typename Chain::iterator	facePos
	)

template<typename freeModuleType , typename P_GeneratorCode >

template int ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::reduceViaLocalSort ( )

template<typename freeModuleType , typename P_GeneratorCode >

template int ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::reduceViaSort ( )

template<typename freeModuleType , typename P_GeneratorCode >

bool ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::reduceViaStack	(	unsigned int	searchedCoboundrySize,
		int &	pairsReduced
	)

template<typename freeModuleType , typename P_GeneratorCode >

template<typename freeModuleType2 >

ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::ReducibleFreeChainComplex ( const FreeChainComplex< freeModuleType2 > & fcc )

template<typename freeModuleType , typename P_GeneratorCode >

template<typename GeneratorType2 >

ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::ReducibleFreeChainComplex ( const std::vector< GeneratorType2 > & A_gens )

template<typename freeModuleType , typename P_GeneratorCode >

template<typename GeneratorType2 >

ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::ReducibleFreeChainComplex ( const std::set< GeneratorType2 > & A_gensSet )

template<typename freeModuleType , typename P_GeneratorCode >

template<typename P_Set >

ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::ReducibleFreeChainComplex	(	const P_Set &	A_set,
		bool	A_storeReducedPairs = `false`
	)

template<typename freeModuleType , typename P_GeneratorCode >

template<typename Iterator , typename GeneratorData >

ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::ReducibleFreeChainComplex	(	Iterator	begin,
		Iterator	end,
		GeneratorData	generatorData,
		bool	A_storeReducedPairs = `false`
	)

template<typename freeModuleType , typename P_GeneratorCode >

template bool ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::removeSimpleHomologyGenerators ( std::vector< std::vector< GeneratorCode > > & simpleHomologyGenerators )

template<typename freeModuleType , typename P_GeneratorCode >

void ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::restore ( Chain & A_chain )

inline

void VectSetBuilder::setBoundingBox	(	int	A_cmin[],
		int	A_cmax[]
	)

inlinevirtual

Reimplemented from CubSetBuilder.

template<typename P_Set >

void BmpCubCelSetBuilder< P_Set >::setBoundingBox	(	int	A_cmin[],
		int	A_cmax[]
	)

inlinevirtual

Reimplemented from CubSetBuilder.

Reimplemented in BmpCubCelMVMapBuilder< P_Set, P_DomSet, P_RngSet >.

template<typename P_Set >

void BmpCubSetBuilder< P_Set >::setBoundingBox	(	int	A_cmin[],
		int	A_cmax[]
	)

inlinevirtual

Reimplemented from CubSetBuilder.

Reimplemented in BmpCubMVMapBuilder< P_Set, P_DomSet, P_RngSet >.

virtual void CubSetBuilder::setBoundingBox	(	int	A_cmin[],
		int	A_cmax[]
	)

inlinevirtual

Reimplemented in BmpCubCelMVMapBuilder< P_Set, P_DomSet, P_RngSet >, BmpCubMVMapBuilder< P_Set, P_DomSet, P_RngSet >, BmpCubSetBuilder< P_Set >, BmpCubCelSetBuilder< P_Set >, VectSetBuilder, and RepCubSetBuilder< P_RepSet >.

template<typename P_Set , typename P_DomSet , typename P_RngSet >

void BmpCubMVMapBuilder< P_Set, P_DomSet, P_RngSet >::setBoundingBox	(	int	A_cmin[],
		int	A_cmax[]
	)

inlinevirtual

Reimplemented from BmpCubSetBuilder< P_Set >.

template<typename P_Set , typename P_DomSet , typename P_RngSet >

void BmpCubCelMVMapBuilder< P_Set, P_DomSet, P_RngSet >::setBoundingBox	(	int	A_cmin[],
		int	A_cmax[]
	)

inlinevirtual

Reimplemented from BmpCubCelSetBuilder< P_Set >.

void CubSetBuilder::setBoundingBoxNeeded ( bool _boundingBoxNeeded )

inline

template<typename P_Set >

void BmpCubCelSetBuilder< P_Set >::setDim ( int A_embDim )

inline

void VectSetBuilder::setDim ( int A_embDim )

inline

void CubSetBuilder::setDim ( int A_embDim )

inline

template<typename P_Set >

void BmpCubSetBuilder< P_Set >::setDim ( int A_embDim )

inline

void VectMapBuilder::setDomDim ( int A_domEmbDim )

inline

template<typename P_Set , typename P_DomSet , typename P_RngSet >

void BmpCubMVMapBuilder< P_Set, P_DomSet, P_RngSet >::setDomDim ( int A_domEmbDim )

inline

template<typename P_Set , typename P_DomSet , typename P_RngSet >

void BmpCubCelMVMapBuilder< P_Set, P_DomSet, P_RngSet >::setDomDim ( int A_domEmbDim )

inline

void CubSetBuilder::setFileType ( FileType A_fileType )

inline

void CubSetBuilder::setFullCubes ( bool b )

inline

void VectSetBuilder::setFullCubes ( bool b )

inline

template<typename P_Set >

void BmpCubSetBuilder< P_Set >::setFullCubes ( bool b )

inline

void CubSetBuilder::setOpenCells ( bool b )

inline

void VectMapBuilder::setRngDim ( int A_rngEmbDim )

inline

template<typename P_Set , typename P_DomSet , typename P_RngSet >

void BmpCubMVMapBuilder< P_Set, P_DomSet, P_RngSet >::setRngDim ( int A_rngEmbDim )

inline

template<typename P_Set , typename P_DomSet , typename P_RngSet >

void BmpCubCelMVMapBuilder< P_Set, P_DomSet, P_RngSet >::setRngDim ( int A_rngEmbDim )

inline

void VectSetBuilder::show ( )

inline

template<typename P_Set >

void BmpCubSetBuilder< P_Set >::show ( )

inline

template<typename P_Set >

void BmpCubCelSetBuilder< P_Set >::show ( )

inline

void VectMapBuilder::show ( )

inline

template<typename P_Set , typename P_DomSet , typename P_RngSet >

void BmpCubMVMapBuilder< P_Set, P_DomSet, P_RngSet >::show ( )

inline

template<typename P_Set , typename P_DomSet , typename P_RngSet >

void BmpCubCelMVMapBuilder< P_Set, P_DomSet, P_RngSet >::show ( )

inline

int VectSetBuilder::size ( )

inline

template<typename P_Set >

int BmpCubSetBuilder< P_Set >::size ( )

inline

template<typename P_Set >

int BmpCubCelSetBuilder< P_Set >::size ( )

inline

template<typename freeModuleType , typename P_GeneratorCode >

void ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::storeReducedPair	(	int	A_coFaceDim,
		GeneratorCode	A_coFace,
		GeneratorCode	A_face,
		const Chain &	A_bdy,
		const CoChain &	A_cbdy,
		ScalarType	A_lambda
	)

inline

template<typename freeModuleType2 >

void swap	(	QuotientGradedModule< freeModuleType2 > &	A_qgm1,
		QuotientGradedModule< freeModuleType2 > &	A_qgm2
	)

inline

template<typename freeModuleType >

void swap	(	FreeChainComplex< freeModuleType > &	A_fcc1,
		FreeChainComplex< freeModuleType > &	A_fcc2
	)

inline

template<typename freeModuleType >

void swap	(	QuotientModule< freeModuleType > &	A_subm1,
		QuotientModule< freeModuleType > &	A_subm2
	)

template<typename freeModuleType , typename P_GeneratorCode >

void swap	(	ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode > &	A_rfcc1,
		ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode > &	A_rfcc2
	)

template<typename freeModuleType2 >

void swap	(	QuotientModule< freeModuleType2 > &	A_subm1,
		QuotientModule< freeModuleType2 > &	A_subm2
	)

inline

template<typename freeModuleType2 , typename GeneratorCode2 >

void swap	(	ReducibleFreeChainComplex< freeModuleType2, GeneratorCode2 > &	A_rfcc1,
		ReducibleFreeChainComplex< freeModuleType2, GeneratorCode2 > &	A_rfcc2
	)

inline

void toCub	(	const char *	inFileName,
		const char *	outFileName
	)

template<typename freeModuleType , typename P_GeneratorCode >

int ReducibleFreeChainComplex< freeModuleType, P_GeneratorCode >::topDim ( )

VectMapBuilder::VectMapBuilder ( )

inline

VectSetBuilder::VectSetBuilder ( )

inline

VectSetBuilder::VectSetBuilder ( CRef< SetDataType > A_setDataCR )

inline

Variable Documentation

unsigned char* acyclicConfigsD3

Uncompressed table (8 MB) of 3D acyclic neighborhood configurations.

template<typename P_Set >

std::vector<int> BmpCubSetBuilder< P_Set >::boundingBox

protected

template<typename P_Set >

std::vector<int> BmpCubCelSetBuilder< P_Set >::boundingBox

protected

bool CubSetBuilder::boundingBoxNeeded

protected

unsigned char bzip2acyclicConfigsD3[]

The acyclic configurations table compressed with bzip2.

unsigned int bzip2acyclicConfigsD3size

intVect VectMapBuilder::cDomMax

intVect VectMapBuilder::cDomMin

template<typename P_Set >

std::vector<int> BmpCubSetBuilder< P_Set >::cmax

protected

template<typename P_Set >

std::vector<int> BmpCubCelSetBuilder< P_Set >::cmax

protected

template<typename P_Set >

std::vector<int> BmpCubSetBuilder< P_Set >::cmin

protected

template<typename P_Set >

std::vector<int> BmpCubCelSetBuilder< P_Set >::cmin

protected

intVect VectMapBuilder::cRngMax

intVect VectMapBuilder::cRngMin

template<typename P_CubSet , typename P_CubCelSet , typename P_FreeChainComplex >

CubSetFunctors<P_CubSet,P_CubCelSet,P_FreeChainComplex>::FreeChainComplex_CubCelSet_FunctorType CubSetFunctors<P_CubSet,P_CubCelSet,P_FreeChainComplex>::FreeChainComplex_From_CubCelSet & CubSetFunctors

const int domEmbDim =3

template<typename P_Set , typename P_DomSet , typename P_RngSet >

const int BmpCubMVMapBuilder< P_Set, P_DomSet, P_RngSet >::domEmbDim =DomSetType::theDim

static

template<typename P_Set , typename P_DomSet , typename P_RngSet >

const int BmpCubCelMVMapBuilder< P_Set, P_DomSet, P_RngSet >::domEmbDim =DomSetType::theDim

static

int VectMapBuilder::domEmbDim

const int eDim =2

template<typename P_Set >

const int BmpCubCelSetBuilder< P_Set >::embDim =SetType::theDim

static

template<typename P_Set >

const int BmpCubSetBuilder< P_Set >::embDim =SetType::theDim

static

int CubSetBuilder::embDim

protected

int VectSetBuilder::embDim

protected

template<typename P_Set , typename P_DomSet , typename P_RngSet >

const int BmpCubMVMapBuilder< P_Set, P_DomSet, P_RngSet >::embDim =SetType::theDim

static

template<typename P_Set , typename P_DomSet , typename P_RngSet >

const int BmpCubCelMVMapBuilder< P_Set, P_DomSet, P_RngSet >::embDim =SetType::theDim

static

ofstreamcout fcout

FileType CubSetBuilder::fileType

protected

bool CubSetBuilder::fullCubes

protected

const int graphEmbDim =domEmbDim+rngEmbDim

template<typename P_CubSet , typename P_CubCelSet , typename P_FreeChainComplex = BasicElementaryCellFreeChainComplexType>

int CubSetFunctors< P_CubSet, P_CubCelSet, P_FreeChainComplex >::lastAcyclicSubsetSize =0

static

intVect VectMapBuilder::locDomData

intVect VectMapBuilder::locRngData

MapDataType VectMapBuilder::mapData

bool CubSetBuilder::openCells

protected

const int rngEmbDim =3

const int rngEmbDim =2

template<typename P_Set , typename P_DomSet , typename P_RngSet >

const int BmpCubMVMapBuilder< P_Set, P_DomSet, P_RngSet >::rngEmbDim =RngSetType::theDim

static

template<typename P_Set , typename P_DomSet , typename P_RngSet >

const int BmpCubCelMVMapBuilder< P_Set, P_DomSet, P_RngSet >::rngEmbDim =RngSetType::theDim

static

int VectMapBuilder::rngEmbDim

template<int embDim>

CrbMapHom< dim > CrbMapHom< dim >::selector

static

template<typename P_Set >

CRef<SetType> BmpCubSetBuilder< P_Set >::setCR

protected

template<typename P_Set >

CRef<SetType> BmpCubCelSetBuilder< P_Set >::setCR

protected

CRef<SetDataType> VectSetBuilder::setDataCR

protected

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